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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 553 | OmegaFold | Structure Prediction | Structure Prediction | 35.8 | +8% |
| 552 | nf-coreatacseq | Epigenomics | Epigenomics | 35.8 | +8% |
Data as of: Apr 12, 2026
| 551 | nf-core | Workflows | Workflows | 35.8 | +8% |
| 550 | Nextclade | Phylogenetics | Phylogenetics | 35.8 | +8% |
| 549 | ncbi-genome-download | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |
| 548 | MZmine 3 | Proteomics | Proteomics | 35.8 | +8% |
| 547 | Muon | Single-Cell | Single-Cell | 35.8 | +8% |
| 546 | MSstats | Proteomics | Proteomics | 35.8 | +8% |
| 545 | MGI/GXD | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |
| 544 | methylpy | Epigenomics | Epigenomics | 35.8 | +8% |