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MZmine 3 — open-source Java software for LC-MS and GC-MS mass spectrometry data processing in untargeted metabolomics. Provides feature detection (ADAP, local minimum), chromatogram building, isotope
Use with AI
Install the MCP server or CLI to instantly fetch MZmine 3 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/mzmine
OpenMS — open-source C++ framework with Python bindings (pyOpenMS) for liquid chromatography-mass spectrometry (LC-MS/MS) data analysis. Provides 200+ TOPP command-line tools for proteomics, metabolom
2 shared topics • 1 shared operation
CAMERA routing skill for metabolomics LC-MS peak annotation and compound spectra extraction. Use this skill when users mention CAMERA, XCMS annotation, peak grouping, pseudo-spectra, isotope peak anno
2 shared topics
GNPS (Global Natural Products Social Molecular Networking) — web-based mass spectrometry platform for molecular networking, spectral library searching, and community-driven metabolomics analysis. Prov
2 shared topics
GNPS/FBMN routing skill for metabolomics and lipidomics molecular networking via the Global Natural Products Social (GNPS) platform and Feature-Based Molecular Networking (FBMN) workflow. Use this ski
2 shared topics
pyOpenMS — Python bindings for OpenMS mass spectrometry framework. Read/write mzML, mzXML, mzTab, TraML, and FASTA files. Signal processing, peak picking, feature detection, peptide identification, pr
2 shared topics