Loading homepage
OpenMS — open-source C++ framework with Python bindings (pyOpenMS) for liquid chromatography-mass spectrometry (LC-MS/MS) data analysis. Provides 200+ TOPP command-line tools for proteomics, metabolom
Use with AI
Install the MCP server or CLI to instantly fetch OpenMS documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/openms
MSnbase routing skill for R/Bioconductor mass spectrometry data handling, preprocessing, and quantification. Use this skill when users mention MSnbase, MSnExp, OnDiskMSnExp, MSnSet, LC-MS/MS preproces
3 shared topics • 1 shared operation
pyOpenMS — Python bindings for OpenMS mass spectrometry framework. Read/write mzML, mzXML, mzTab, TraML, and FASTA files. Signal processing, peak picking, feature detection, peptide identification, pr
3 shared topics • 1 shared operation
Spectra routing skill for mass spectrometry data representation and manipulation in R/Bioconductor. Use this skill when users mention Spectra, RforMassSpectrometry, MsBackend, MsBackendMzR, MsBackendH
3 shared topics
Comet — open-source tandem mass spectrometry (MS/MS) sequence database search engine for peptide identification. Searches MS/MS spectra against FASTA protein databases producing pepXML, mzIdentML, SQT
2 shared topics • 1 shared operation
MaxQuant — quantitative proteomics platform for analyzing large-scale mass spectrometry data. Integrates the Andromeda search engine for peptide identification, supports label-free quantification (LFQ
2 shared topics • 1 shared operation