MSnbase routing skill for R/Bioconductor mass spectrometry data handling, preprocessing, and quantification. Use this skill when users mention MSnbase, MSnExp, OnDiskMSnExp, MSnSet, LC-MS/MS preproces
Use with AI
Install the MCP server or CLI to instantly fetch MSnbase documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/msnbase
OpenMS — open-source C++ framework with Python bindings (pyOpenMS) for liquid chromatography-mass spectrometry (LC-MS/MS) data analysis. Provides 200+ TOPP command-line tools for proteomics, metabolom
3 shared topics • 1 shared operation
pyOpenMS — Python bindings for OpenMS mass spectrometry framework. Read/write mzML, mzXML, mzTab, TraML, and FASTA files. Signal processing, peak picking, feature detection, peptide identification, pr
3 shared topics • 1 shared operation
Spectra routing skill for mass spectrometry data representation and manipulation in R/Bioconductor. Use this skill when users mention Spectra, RforMassSpectrometry, MsBackend, MsBackendMzR, MsBackendH
3 shared topics • 1 shared operation
DIA-NN R package — R toolkit for post-processing DIA-NN proteomics search results. Provides report loading (diann_load), precursor/peptide/protein matrix generation with FDR filtering (diann_matrix),
2 shared topics • 2 shared operations
Philosopher — fast, scalable Go toolkit for shotgun proteomics data analysis. Provides database downloading, peptide validation (PeptideProphet), protein inference (ProteinProphet), PTM localization (
2 shared topics • 2 shared operations