Spectra

MSnbase routing skill for R/Bioconductor mass spectrometry data handling, preprocessing, and quantification. Use this skill when users mention MSnbase, MSnExp, OnDiskMSnExp, MSnSet, LC-MS/MS preproces

3 shared topics • 1 shared operation

OpenMS — open-source C++ framework with Python bindings (pyOpenMS) for liquid chromatography-mass spectrometry (LC-MS/MS) data analysis. Provides 200+ TOPP command-line tools for proteomics, metabolom

3 shared topics

pyOpenMS — Python bindings for OpenMS mass spectrometry framework. Read/write mzML, mzXML, mzTab, TraML, and FASTA files. Signal processing, peak picking, feature detection, peptide identification, pr

3 shared topics

Use when working with Crux — the University of Washington Noble Lab's open-source toolkit for bottom-up tandem mass spectrometry (MS/MS) proteomics analysis. Covers the full peptide identification pip

2 shared topics • 1 shared operation

DIA-NN (Data-Independent Acquisition by Neural Networks) is a universal software suite for DIA proteomics data analysis. Processes raw mass spectrometry files (.mzML, .raw, .d, .wiff) using neural net

2 shared topics • 1 shared operation