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Use when working with Crux — the University of Washington Noble Lab's open-source toolkit for bottom-up tandem mass spectrometry (MS/MS) proteomics analysis. Covers the full peptide identification pip
Use with AI
Install the MCP server or CLI to instantly fetch Crux documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/crux
docker pull biocontainers/crux:1.4DIA-NN R package — R toolkit for post-processing DIA-NN proteomics search results. Provides report loading (diann_load), precursor/peptide/protein matrix generation with FDR filtering (diann_matrix),
2 shared topics • 1 shared operation
GRITS Toolbox is a free, open-source desktop application for processing, annotating, and archiving glycomics mass spectrometry data. It automates MS/MS spectral annotation of glycan fragments against
2 shared topics • 1 shared operation
MSnbase routing skill for R/Bioconductor mass spectrometry data handling, preprocessing, and quantification. Use this skill when users mention MSnbase, MSnExp, OnDiskMSnExp, MSnSet, LC-MS/MS preproces
2 shared topics • 1 shared operation
pGlyco3 is an intact N- and O-glycopeptide search engine from pFind Studio. It uses a glycan-first search strategy with Y-ion evidence, supports monosaccharide modifications, provides glycan and pepti
2 shared topics • 1 shared operation
Philosopher — fast, scalable Go toolkit for shotgun proteomics data analysis. Provides database downloading, peptide validation (PeptideProphet), protein inference (ProteinProphet), PTM localization (
2 shared topics • 1 shared operation