nf-core

Expression Atlas is the EMBL-EBI database and programmatic toolkit for querying baseline and differential gene expression across thousands of experiments in 50+ species. Use this skill to search exper

3 shared topics • 1 shared operation

Use when working with SATURN for cross-species single-cell RNA-seq integration that combines AnnData count matrices with protein embedding TorchDicts. SATURN trains macrogene representations with k-me

3 shared topics

UCE (Universal Cell Embeddings) — species-agnostic cell embedding model from Stanford SNAP Lab that uses protein language models (ESM-2) to create universal cell representations without species-specif

3 shared topics

Benchmark and compare bioinformatics tools for a given analysis task using published benchmark data (accuracy, runtime, memory), PrecisionFDA and CAMI challenge results, bc7score community metrics, an

2 shared topics • 1 shared operation

DRAGEN (Dynamic Read Analysis for GENomics) — Illumina's FPGA-accelerated bioinformatics platform for secondary analysis of next-generation sequencing data. Performs hardware-accelerated mapping, alig

2 shared topics • 1 shared operation