Expression Atlas

nf-core — community-curated Nextflow pipeline framework with 100+ production bioinformatics pipelines. Provides CLI tools for listing, launching, downloading, creating, and linting pipelines; managing

3 shared topics • 1 shared operation

UCE (Universal Cell Embeddings) — species-agnostic cell embedding model from Stanford SNAP Lab that uses protein language models (ESM-2) to create universal cell representations without species-specif

3 shared topics • 1 shared operation

AntiFold — antibody-specific inverse folding model built on ESM-IF1, fine-tuned on antibody structures from SAbDab and OAS databases. Predicts residue log-likelihoods for antibody variable domains (IM

2 shared topics • 2 shared operations

BioGPT — domain-specific generative pre-trained transformer for biomedical text mining and generation, pre-trained on 15M+ PubMed abstracts. Supports biomedical text generation, relation extraction, q

2 shared topics • 2 shared operations

WARP (WDL Analysis Research Pipelines) — Broad Institute's cloud-optimized collection of genomics pipelines written in WDL (Workflow Description Language). Covers whole-genome sequencing (WGS), whole-

2 shared topics • 2 shared operations