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MGI/GXD (Mouse Genome Informatics / Gene Expression Database) — authoritative resource for mouse genetics, genomics, and gene expression data maintained by The Jackson Laboratory. Provides comprehensi
Use with AI
Install the MCP server or CLI to instantly fetch MGI/GXD documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/mgigxd
Funannotate is a eukaryotic genome annotation pipeline that integrates ab initio gene prediction, homology-based evidence, and functional annotation. Use when users ask about funannotate, eukaryotic g
2 shared topics • 2 shared operations
Use when working with Gviz, the Bioconductor R package for plotting genomic coordinates, annotations, signal tracks, read alignments, and sequence context in genome-browser-style figures. Covers core
2 shared topics • 2 shared operations
MAKER — portable genome annotation pipeline that integrates ab initio gene predictors (SNAP, Augustus, GeneMark), protein and EST evidence alignment, and repeat masking to produce GFF3 gene models wit
2 shared topics • 2 shared operations
Use when working with VAST-TOOLS for alternative splicing analysis in RNA-seq data. Routes to references and scripts for VASTDB setup, splicing event quantification (PSI/PIR), differential splicing wi
2 shared topics • 2 shared operations
FusionCatcher — tool for detecting somatic fusion genes, translocations, and chimeric transcripts from RNA-seq data. Identifies known and novel gene fusions in tumor and normal samples using multiple
2 shared topics • 1 shared operation