MAKER

Funannotate is a eukaryotic genome annotation pipeline that integrates ab initio gene prediction, homology-based evidence, and functional annotation. Use when users ask about funannotate, eukaryotic g

3 shared topics • 2 shared operations

gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr

3 shared topics • 2 shared operations

Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

2 shared topics • 3 shared operations

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3 shared topics • 1 shared operation

BRAKER — fully automated gene structure annotation pipeline combining GeneMark-ES/ET/EP/ETP with AUGUSTUS training. Supports RNA-Seq evidence (BRAKER1), protein evidence (BRAKER2), and combined RNA-Se

3 shared topics • 1 shared operation