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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 256 | MMseqs2 | Phylogenetics | Phylogenetics | 38.8 | +8% |
| 1677 | MNE-BIDS | Systems Biology | Systems Biology | 24.3 | +3% |
Data as of: Apr 12, 2026
| 1340 | MNE-Python | Systems Biology | Systems Biology | 26.7 | +3% |
| 390 | MOABS | Epigenomics | Epigenomics | 36.4 | +8% |
| 938 | ModelAngelo | Structure Prediction | Structure Prediction | 29.34 | +3% |
| 257 | modkit | Genomics | Genomics | 38.8 | +8% |
| 451 | MOFA+ | Systems Biology | Systems Biology | 35.86 | +8% |
| 1556 | mofapy2 | Systems Biology | Systems Biology | 24.36 | +3% |
| 939 | mokapot -- Semi-Supervised PSM Confidence Estimation | Proteomics | Proteomics | 29.34 | +3% |
| 1842 | MolBART | Structure Prediction | Structure Prediction | 21.9 | +3% |