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Top bioinformatics tools ranked by usage across 94 tools.
Data as of: Apr 12, 2026
| 3 | bcl2fastq | Workflows | Workflows | 38.8 | +8% |
| 4 | MIP | Workflows | Workflows | 38.74 | +8% |
| 5 | Singularity/Apptainer | Workflows | Workflows | 36.46 | +10% |
| 6 | CWLtool | Workflows | Workflows | 36.34 | +8% |
| 7 | Toil | Workflows | Workflows | 36.34 | +8% |
| 8 | Arvados | Workflows | Workflows | 35.8 | +8% |
| 9 | nf-core | Workflows | Workflows | 35.8 | +8% |
| 10 | WDL/Cromwell | Workflows | Workflows | 35.8 | +8% |