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CWLtool — reference implementation of the Common Workflow Language (CWL) for portable, reproducible bioinformatics workflows. Executes CommandLineTool, Workflow, and ExpressionTool descriptors written
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Install the MCP server or CLI to instantly fetch CWLtool documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/cwltool
Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv
2 shared topics • 3 shared operations
Dockstore — open platform for sharing Docker-based bioinformatics tools and workflows written in CWL, WDL, Nextflow, and Galaxy. Provides workflow discovery, versioned registrations, TRS API for progr
2 shared topics • 3 shared operations
Google Life Sciences (hpc-cloud) skill for routing genomic and bioinformatics workload execution through the Cloud Life Sciences API and adjacent Google Cloud services. Use this skill when users menti
2 shared topics • 3 shared operations
Latch SDK — Python-native bioinformatics workflow platform for registering, executing, and sharing reproducible workflows on cloud infrastructure. Define workflows with @workflow and @task decorators,
2 shared topics • 3 shared operations
nbconvert converts Jupyter notebooks (.ipynb) into static formats including HTML, Markdown, LaTeX, PDF, WebPDF, slides, and executable scripts, and can optionally execute notebooks before export. Use
2 shared topics • 3 shared operations