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Latch SDK — Python-native bioinformatics workflow platform for registering, executing, and sharing reproducible workflows on cloud infrastructure. Define workflows with @workflow and @task decorators,
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Install the MCP server or CLI to instantly fetch Latch documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/latch
BIMS (Biobank Information Management System) — open-source platform for biorepository sample lifecycle management. Tracks biological specimens (blood, tissue, DNA, plasma) from collection through stor
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Black is the uncompromising Python code formatter used to enforce consistent style with minimal configuration. Use this skill when users ask to format Python code, run black in CI, configure pyproject
2 shared topics • 3 shared operations
Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv
2 shared topics • 3 shared operations
CWLtool — reference implementation of the Common Workflow Language (CWL) for portable, reproducible bioinformatics workflows. Executes CommandLineTool, Workflow, and ExpressionTool descriptors written
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nbconvert converts Jupyter notebooks (.ipynb) into static formats including HTML, Markdown, LaTeX, PDF, WebPDF, slides, and executable scripts, and can optionally execute notebooks before export. Use
2 shared topics • 3 shared operations