tskit

AfterQC — automatic filtering, trimming, error removing and quality control for FASTQ data. Processes Illumina paired-end and single-end reads with automatic adapter detection, overlap-based error cor

1 shared topic • 2 shared operations

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

1 shared topic • 2 shared operations

Use this skill for statistical simulation of single-cell and spatial omics data with scDesign3. Route here when users ask about generating synthetic scRNA-seq data, benchmarking analysis tools with re

1 shared topic • 2 shared operations

stdpopsim is a community-maintained catalog of standardized population genetic simulation models. Use when users need to simulate genetic data under published demographic models for specific species (

1 shared topic • 2 shared operations

pigz (Parallel Implementation of GZip) — multi-threaded drop-in replacement for gzip that compresses and decompresses files using multiple CPU cores. Supports gzip, zlib, and single-entry zip formats.

3 shared operations