stdpopsim

Use this skill for statistical simulation of single-cell and spatial omics data with scDesign3. Route here when users ask about generating synthetic scRNA-seq data, benchmarking analysis tools with re

1 shared topic • 3 shared operations

AfterQC — automatic filtering, trimming, error removing and quality control for FASTQ data. Processes Illumina paired-end and single-end reads with automatic adapter detection, overlap-based error cor

1 shared topic • 2 shared operations

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

1 shared topic • 2 shared operations

tskit is the tree-sequence toolkit for population genetics: it stores, analyzes, and converts genealogical data in the efficient .trees format used by msprime, SLiM, tsinfer, and other simulators. Use

1 shared topic • 2 shared operations

Use when working with Convex.jl — a Julia package for Disciplined Convex Programming (DCP) that formulates and solves convex optimization problems with natural mathematical syntax. Covers problem cons

1 shared topic • 1 shared operation