Loading homepage
Use this skill for statistical simulation of single-cell and spatial omics data with scDesign3. Route here when users ask about generating synthetic scRNA-seq data, benchmarking analysis tools with re
Use with AI
Install the MCP server or CLI to instantly fetch scDesign3 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/scdesign3
stdpopsim is a community-maintained catalog of standardized population genetic simulation models. Use when users need to simulate genetic data under published demographic models for specific species (
1 shared topic • 3 shared operations
AGAT (Another Gff Analysis Toolkit) — comprehensive Perl toolkit for reading, writing, validating, fixing, and manipulating genome annotation files in GFF3, GTF, and GFF2 formats. Converts between for
2 shared topics • 1 shared operation
CellGenIT tools from the Wellcome Sanger Institute Cellular Genetics Informatics team. Suite of Python utilities for single-cell genomics including sinto (fragment file generation from BAM), cellhint
2 shared topics • 1 shared operation
Computational tools and workflows for regenerative medicine research: stem cell differentiation trajectory analysis, iPSC quality control, cell therapy manufacturing analytics, organoid single-cell pr
2 shared topics • 1 shared operation
Seurat — comprehensive R toolkit for single-cell genomics enabling QC, normalization (LogNormalize, SCTransform), feature selection, dimensionality reduction (PCA, UMAP, t-SNE), graph-based clustering
2 shared topics • 1 shared operation