pigz

seqtk — fast lightweight C toolkit for processing FASTA and FASTQ files. Supports format conversion (FASTQ↔FASTA), random subsampling, quality trimming, reverse complement, base composition, sequence

2 shared topics • 2 shared operations

Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv

2 shared topics • 1 shared operation

Docker — container platform for building, running, and distributing reproducible bioinformatics environments. Provides Dockerfile authoring, image management, container execution with volume mounts fo

2 shared topics • 1 shared operation

nbconvert converts Jupyter notebooks (.ipynb) into static formats including HTML, Markdown, LaTeX, PDF, WebPDF, slides, and executable scripts, and can optionally execute notebooks before export. Use

2 shared topics • 1 shared operation

nf-core/eager is a Nextflow pipeline for ancient DNA (aDNA) and palaeogenomics analysis. Handles adapter trimming, low-complexity filtering, read mapping with BWA-aln (optimal for short aDNA reads), d

2 shared topics • 1 shared operation