seqtk

pigz (Parallel Implementation of GZip) — multi-threaded drop-in replacement for gzip that compresses and decompresses files using multiple CPU cores. Supports gzip, zlib, and single-entry zip formats.

2 shared topics • 2 shared operations

nf-core/eager is a Nextflow pipeline for ancient DNA (aDNA) and palaeogenomics analysis. Handles adapter trimming, low-complexity filtering, read mapping with BWA-aln (optimal for short aDNA reads), d

2 shared topics • 1 shared operation

fastp — ultra-fast all-in-one FASTQ preprocessor for quality control, adapter trimming, quality filtering, per-read trimming, polyG/polyX removal, UMI processing, base correction, deduplication, and c

1 shared topic • 2 shared operations

nf-core/atacseq — Nextflow pipeline for ATAC-seq (Assay for Transposase-Accessible Chromatin with sequencing) data analysis. Handles paired- or single-end reads through adapter trimming (Trim Galore),

1 shared topic • 2 shared operations

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

1 shared topic • 2 shared operations