fastp

AfterQC — automatic filtering, trimming, error removing and quality control for FASTQ data. Processes Illumina paired-end and single-end reads with automatic adapter detection, overlap-based error cor

1 shared topic • 3 shared operations

Use when working with ShortRead, the Bioconductor package for FASTQ and FASTA quality control, chunked read iteration, random sampling, filtering, trimming, and QA reporting in R. Covers FastqStreamer

1 shared topic • 3 shared operations

Chopper — fast Rust-based quality, length, and GC content filtering and trimming tool for long-read sequencing data (Oxford Nanopore, PacBio) in FASTQ format. Successor to NanoFilt with multithreaded

1 shared topic • 2 shared operations

pigz (Parallel Implementation of GZip) — multi-threaded drop-in replacement for gzip that compresses and decompresses files using multiple CPU cores. Supports gzip, zlib, and single-entry zip formats.

1 shared topic • 2 shared operations

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

1 shared topic • 2 shared operations