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Docker — container platform for building, running, and distributing reproducible bioinformatics environments. Provides Dockerfile authoring, image management, container execution with volume mounts fo
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Install the MCP server or CLI to instantly fetch Docker documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/docker
docker pull biocontainers/docker:7.1.0BIMS (Biobank Information Management System) — open-source platform for biorepository sample lifecycle management. Tracks biological specimens (blood, tissue, DNA, plasma) from collection through stor
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Black is the uncompromising Python code formatter used to enforce consistent style with minimal configuration. Use this skill when users ask to format Python code, run black in CI, configure pyproject
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Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv
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nbconvert converts Jupyter notebooks (.ipynb) into static formats including HTML, Markdown, LaTeX, PDF, WebPDF, slides, and executable scripts, and can optionally execute notebooks before export. Use
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SRA Toolkit — NCBI command-line utilities for downloading, converting, and validating Sequence Read Archive (SRA) data. Provides prefetch for bulk download, fasterq-dump for high-speed SRA-to-FASTQ co
2 shared topics • 3 shared operations