Sourcetracker2

MaAsLin 2 (Microbiome Multivariable Association with Linear Models 2) is the bioBakery tool for finding associations between microbial features (taxa, functional pathways, gene families) and sample me

3 shared topics

MIDORI Reference 2 (MIDORI2) is a curated reference database of eukaryotic mitochondrial DNA and amino acid sequences used for taxonomic assignment of environmental and metabarcoding samples. It provi

2 shared topics • 1 shared operation

QIIME 2 — open-source microbiome bioinformatics platform for amplicon and marker-gene analysis. Plugin-based architecture with semantic type system enforcing data compatibility between analysis steps.

2 shared topics

vConTACT2 (Viral Contig Automatic Cluster Taxonomy 2) clusters prokaryotic viral genomes and contigs by shared protein content to assign taxonomy context from reference viral genomes. Use when working

2 shared topics

rjags is the canonical R interface to JAGS (Just Another Gibbs Sampler), providing R functions for compiling BUGS-language models, running adaptive and burn-in phases, and drawing posterior samples as

1 shared topic • 1 shared operation