Vcontact2

VIBRANT — metagenomics tool for identifying and annotating viruses from microbial assemblies (metagenomes, isolates, and virome datasets). Uses neural networks and KEGG/Pfam/VOG HMM profiles to classi

3 shared topics

Nextstrain — an open-source project to harness the scientific and public health potential of pathogen genome data. Provides a continually-updated view of publicly available data alongside powerful ana

2 shared topics • 1 shared operation

INSaFLU-TELEVIR is a web-based (and locally installable) bioinformatics suite for viral genomic surveillance and metagenomics-based virus detection. It processes Illumina, Ion Torrent, and Oxford Nano

1 shared topic • 2 shared operations

SourceTracker2 is a Bayesian microbial source-tracking tool that estimates source contributions to sink communities using Gibbs sampling. Use this skill for SourceTracker/SourceTracker2 workflows, mic

2 shared topics

VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out

2 shared topics