t-SNE (Rtsne)

openTSNE — modular Python library for t-distributed Stochastic Neighbor Embedding. Implements Barnes-Hut and FIt-SNE (interpolation-based) acceleration for scalable O(n log n) / near-linear t-SNE on l

2 shared topics • 2 shared operations

t-SNE (t-distributed Stochastic Neighbor Embedding) for nonlinear dimensionality reduction and visualization of high-dimensional data. Covers Barnes-Hut and exact modes, FIt-SNE/openTSNE interpolation

2 shared topics • 2 shared operations

Use when working with Borzoi — a sequence-to-function DNA foundation model — for predicting genome-wide regulatory activity from DNA sequences. Borzoi predicts RNA-seq, ATAC-seq, ChIP-seq, and histone

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EBSeq is an R/Bioconductor package implementing an empirical Bayes hierarchical model for identifying differentially expressed (DE) genes and isoforms in RNA-seq experiments. It supports both two-cond

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sciPENN — neural network model for single-cell protein expression imputation and multi-omics integration. Transfers protein predictions from CITE-seq (paired RNA+protein) training data to unpaired RNA

2 shared topics