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Use when working with Borzoi — a sequence-to-function DNA foundation model — for predicting genome-wide regulatory activity from DNA sequences. Borzoi predicts RNA-seq, ATAC-seq, ChIP-seq, and histone
Use with AI
Install the MCP server or CLI to instantly fetch Borzoi documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/borzoi
AlleleSeq — pipeline for detecting allele-specific expression (ASE) and allele-specific binding (ASB) from RNA-seq and ChIP-seq data at heterozygous SNP positions. Constructs a personal diploid genome
2 shared topics • 1 shared operation
Bioconductor package management and installation via BiocManager for R-based genomic data analysis. Install, update, and validate Bioconductor packages for RNA-seq, ChIP-seq, single-cell, methylation,
2 shared topics • 1 shared operation
BPNet — deep learning framework for learning base-resolution regulatory sequence features from genomics assays (ChIP-seq, ATAC-seq, CUT&RUN). Uses dilated convolutional neural networks to predict TF b
2 shared topics • 1 shared operation
GenomicRanges — Bioconductor R package for representing, manipulating, and analyzing genomic intervals (GRanges, GRangesList). Provides operations for finding overlaps (findOverlaps, subsetByOverlaps)
2 shared topics • 1 shared operation
Use when working with pybedtools — pybedtools — Python interface to BEDTools
2 shared topics • 1 shared operation