GenomicRanges

ENCODE tools provide access to the Encyclopedia of DNA Elements data, including genomic functional elements, ChIP-seq, RNA-seq, and ATAC-seq data. Facilitates data retrieval, query, and analysis for e

3 shared topics • 2 shared operations

AlleleSeq — pipeline for detecting allele-specific expression (ASE) and allele-specific binding (ASB) from RNA-seq and ChIP-seq data at heterozygous SNP positions. Constructs a personal diploid genome

3 shared topics • 1 shared operation

Use when working with Gviz, the Bioconductor R package for plotting genomic coordinates, annotations, signal tracks, read alignments, and sequence context in genome-browser-style figures. Covers core

3 shared topics • 1 shared operation

libBigWig — C library and pyBigWig Python bindings for reading and writing BigWig and BigBed binary indexed genome browser track files. Use when users need to extract signal values, interval statistic

3 shared topics • 1 shared operation

pyBigWig is a Python library for reading and writing bigWig and bigBed files, the standard binary genome-browser signal formats. Use when users need to query per-base coverage or signal values from bi

3 shared topics • 1 shared operation