Ebseq

Corset — C++ tool for clustering de novo assembled transcripts into gene-level groups and producing gene-level counts for differential expression analysis. Groups contigs from Trinity, Trans-ABySS, or

2 shared topics • 1 shared operation

EnhancedVolcano — R/Bioconductor package for creating publication-ready volcano plots with enhanced colouring and labeling from differential expression results. Visualize DESeq2, limma, edgeR output w

2 shared topics • 1 shared operation

sciPENN — neural network model for single-cell protein expression imputation and multi-omics integration. Transfers protein predictions from CITE-seq (paired RNA+protein) training data to unpaired RNA

2 shared topics • 1 shared operation

Use when working with MAST — an R/Bioconductor package for differential expression analysis of single-cell RNA-seq data. Fits a hurdle model (zero-inflated two-component regression) via zlm() to handl

1 shared topic • 2 shared operations

t-SNE (t-distributed Stochastic Neighbor Embedding) for nonlinear dimensionality reduction and visualization of high-dimensional data. Covers Barnes-Hut and exact modes, FIt-SNE/openTSNE interpolation

2 shared topics