T Sne

openTSNE — modular Python library for t-distributed Stochastic Neighbor Embedding. Implements Barnes-Hut and FIt-SNE (interpolation-based) acceleration for scalable O(n log n) / near-linear t-SNE on l

3 shared topics • 2 shared operations

t-SNE via Rtsne — Barnes-Hut t-distributed Stochastic Neighbor Embedding for nonlinear dimensionality reduction and visualization. Wraps Van der Maaten's C++ Barnes-Hut implementation for O(n log n) c

2 shared topics • 2 shared operations

10x Genomics — commercial platform for single-cell and spatial genomics assays including Chromium single-cell RNA-seq (scRNA-seq), single-cell ATAC-seq, single-cell multiome (RNA+ATAC), Visium spatial

2 shared topics • 1 shared operation

AllenSDK is the Python toolkit for accessing Allen Institute for Brain Science datasets including brain atlases, cell types electrophysiology, calcium imaging (Brain Observatory), RNA-seq transcriptom

2 shared topics • 1 shared operation

Use when working with Nebulosa, the R/Bioconductor package for recovering single-cell gene expression signals via kernel density estimation (KDE). Covers plot_density(), weighted KDE (WKDE), joint den

2 shared topics • 1 shared operation