flashfm

Bracken (Bayesian Reestimation of Abundance with KrakEN) — statistical method for computing species-level abundance estimates from Kraken/Kraken2/KrakenUniq taxonomic classifications. Redistributes re

1 shared topic • 1 shared operation

FINEMAP — Bayesian fine-mapping tool for identifying causal variants from GWAS summary statistics and linkage disequilibrium (LD) matrices. Uses shotgun stochastic search to enumerate causal configura

1 shared topic • 1 shared operation

LocusZoom — regional association plot generator for GWAS and fine-mapping results. Creates publication-quality locus zoom plots showing -log10(p-value) vs genomic position with LD coloring, recombinat

1 shared topic • 1 shared operation

NanoPlot — visualization and quality-control tool for Oxford Nanopore long-read sequencing data. Generates read length histograms, quality distribution plots, cumulative yield curves, and alignment id

1 shared topic • 1 shared operation

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

1 shared topic • 1 shared operation