Colony

antiSMASH (antibiotic & Secondary Metabolite Analysis SHell) — genome mining tool for identifying and annotating biosynthetic gene clusters (BGCs) in bacterial and fungal genomes. Detects NRPS, PKS, t

1 shared topic • 1 shared operation

CD-HIT — fast sequence clustering and redundancy reduction for protein and nucleotide sequences. Clusters FASTA sequences at a user-defined identity threshold to remove redundancy from databases. Prov

1 shared topic • 1 shared operation

cuteSV -- sensitive and scalable long-read-based structural variation (SV) detection from PacBio CLR, PacBio CCS/HiFi, and Oxford Nanopore Technology (ONT) sequencing data. Detects deletions, insertio

1 shared topic • 1 shared operation

stLearn — spatial transcriptomics analysis in Python integrating gene expression with tissue morphology. Provides SME (spatial morphological gene expression) normalization, spatial clustering, spatial

1 shared topic • 1 shared operation

Straglr — genome-wide detection and genotyping of tandem repeat (TR) expansions from long-read sequencing alignments (PacBio HiFi, ONT). Performs expansion scanning with configurable size thresholds a

1 shared topic • 1 shared operation