Straglr

Alleloscope — allele-specific copy number analysis and tumor clonality inference from single-cell multi-omics data (scDNA-seq and scATAC-seq). Estimates allele-specific copy number profiles using SNP

2 shared topics • 1 shared operation

CHESS (Comparison of Hi-C Experiments using Structural Similarity) — Python command-line tool for quantitative comparison and automatic feature extraction of chromatin contact data using the structura

2 shared topics • 1 shared operation

cuteSV -- sensitive and scalable long-read-based structural variation (SV) detection from PacBio CLR, PacBio CCS/HiFi, and Oxford Nanopore Technology (ONT) sequencing data. Detects deletions, insertio

2 shared topics • 1 shared operation

Mashtree — rapid distance-based phylogenetic tree construction from genome assemblies using MinHash (Mash) distances. Creates neighbor-joining trees from FASTA assemblies, FASTQ reads, or GenBank file

2 shared topics • 1 shared operation

Ray is a distributed Python runtime for scaling compute-intensive workloads from a laptop to a cluster. Use Ray Core for task and actor parallelism, Ray Data for distributed ETL, Ray Train for distrib

2 shared topics • 1 shared operation