stLearn

Use when working with CATALYST for mass-cytometry or flow-cytometry analysis in R/Bioconductor, including preprocessing with prepData, normCytof, assignPrelim, estCutoffs, applyCutoffs, computeSpillma

1 shared topic • 3 shared operations

CellGenIT tools from the Wellcome Sanger Institute Cellular Genetics Informatics team. Suite of Python utilities for single-cell genomics including sinto (fragment file generation from BAM), cellhint

3 shared topics

CyTOF workflow — differential discovery in high-dimensional mass cytometry data using the CATALYST R/Bioconductor package. Covers the full CyTOF analysis pipeline: bead-based normalization, single-cel

1 shared topic • 3 shared operations

ST Pipeline — automated processing pipeline for spatial transcriptomics (Spatial Transcriptomics method). Handles demultiplexing, quality trimming, contamination filtering, genome alignment, annotatio

3 shared topics

Zarr — chunked, compressed N-dimensional array storage for large numerical datasets in bioinformatics and scientific computing. Supports cloud-native storage (S3, GCS, Azure), parallel read/write, and

3 shared topics