BioNetGen

Use when inferring mechanistic causal links across multiple omics layers with COSMOS (Causal Oriented Search of Multi-Omics Space). Integrates metabolomics, transcriptomics, and signaling pathway data

1 shared topic • 1 shared operation

DeepChem — Python framework for deep learning in drug discovery, materials science, quantum chemistry, and biology. Provides molecular featurizers (ECFP, graph convolutions, Coulomb matrices), pre-bui

1 shared topic • 1 shared operation

MAGeCK-VISPR — comprehensive CRISPR screen analysis framework combining MAGeCK statistical testing (RRA and MLE algorithms) with VISPR interactive visualization. Supports sgRNA count generation from F

1 shared topic • 1 shared operation

MetaboAnalyst — comprehensive R package and web platform for metabolomics data analysis and interpretation. Provides statistical analysis (t-test, ANOVA, PCA, PLS-DA), pathway analysis (KEGG, SMPDB),

1 shared topic • 1 shared operation

Query STRING API for protein-protein interaction networks, functional enrichment, and interaction partner discovery. Covers 59M proteins across 5000+ species with 20B+ scored interactions from 7 evide

1 shared topic • 1 shared operation