COSMOS

Use when working with pathview, the R/Bioconductor package for KEGG pathway-based data integration and visualization. Covers overlaying gene expression data (fold changes, p-values, counts) onto KEGG

3 shared topics • 1 shared operation

DIABLO (Data Integration Analysis for Biomarker discovery using Latent cOmponents) — supervised multi-omics integration method from the mixOmics R package. Performs sparse generalized canonical correl

2 shared topics • 1 shared operation

MetaboAnalyst — comprehensive R package and web platform for metabolomics data analysis and interpretation. Provides statistical analysis (t-test, ANOVA, PCA, PLS-DA), pathway analysis (KEGG, SMPDB),

2 shared topics • 1 shared operation

mixOmics — R/Bioconductor package for multi-omics data integration using multivariate projection methods. Provides PCA, PLS, sPLS, PLS-DA, sPLS-DA, DIABLO (multi-block sPLS-DA), and MINT (multi-study

2 shared topics • 1 shared operation

Use when working with ReactomePA — an R/Bioconductor package for Reactome Pathway Analysis. Performs over-representation analysis (ORA) and gene set enrichment analysis (GSEA) against the Reactome pat

2 shared topics • 1 shared operation