biomaRt

Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

1 shared topic • 2 shared operations

Liftoff — accurate genome annotation liftover tool that maps GFF/GTF annotations between assemblies of the same or closely-related species using Minimap2 alignment. Supports gene copy detection, ORF v

1 shared topic • 2 shared operations

MAKER — portable genome annotation pipeline that integrates ab initio gene predictors (SNAP, Augustus, GeneMark), protein and EST evidence alignment, and repeat masking to produce GFF3 gene models wit

1 shared topic • 2 shared operations

MGI/GXD (Mouse Genome Informatics / Gene Expression Database) — authoritative resource for mouse genetics, genomics, and gene expression data maintained by The Jackson Laboratory. Provides comprehensi

1 shared topic • 2 shared operations

Sarek — nf-core Nextflow pipeline for germline and somatic variant calling from whole-genome sequencing (WGS), whole-exome sequencing (WES), and targeted sequencing data. Supports multiple variant cal

1 shared topic • 2 shared operations