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Autoreject is a Python library for automated rejection and repair of bad EEG and MEG epochs. It uses cross-validation to find optimal peak-to-peak amplitude rejection thresholds per channel, then eith
Use with AI
Install the MCP server or CLI to instantly fetch Autoreject documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/autoreject
Dandelion (sc-dandelion) is a Python package for single-cell BCR and TCR immune repertoire analysis integrated with scanpy. Processes 10x Genomics VDJ output (filtered_contig_annotations.csv, airr_rea
2 shared topics • 1 shared operation
MAGeCK-VISPR — comprehensive CRISPR screen analysis framework combining MAGeCK statistical testing (RRA and MLE algorithms) with VISPR interactive visualization. Supports sgRNA count generation from F
2 shared topics • 1 shared operation
Use when working with OBO Foundry ontologies or the OBO tooling ecosystem: pronto (Python OBO/OWL parser), ROBOT (Java CLI for ontology operations), oaklib/OAK (Ontology Access Kit), or fastobo. Cover
2 shared topics • 1 shared operation
ROBOT — command-line tool for automating OWL and OBO ontology workflows. Build, transform, validate, and publish biomedical ontologies from the command line. Supports merging ontologies, running OWL r
2 shared topics • 1 shared operation
BAGEL2 — Bayesian Analysis of Gene Essentiality v2 for identifying essential genes from CRISPR/Cas9 knockout screens. Calculates Bayes Factors from fold-change distributions using reference sets of co
2 shared topics