Atlas

Use when working with Jovian for viral metagenomics or viromics from raw paired-end Illumina FASTQ data in public-health, clinical, or batch sequencing contexts. Jovian is a Snakemake-based workflow t

1 shared topic • 3 shared operations

Use when building, querying, or manipulating colored compacted de Bruijn graphs (ccDBG) with Bifrost for genome assembly, metagenomics, variant detection, or k-mer analysis. Covers graph construction

1 shared topic • 2 shared operations

Hecatomb is a viral metagenomics framework for short reads and long reads that wraps a Snakemake pipeline for preprocessing, iterative viral annotation, optional assembly, host-read removal, and downs

1 shared topic • 2 shared operations

metaSPAdes — de novo metagenomic assembler from the SPAdes suite using iterative de Bruijn graphs with multiple k-mer sizes optimized for uneven-coverage metagenomes. Assembles short-read (Illumina pa

1 shared topic • 2 shared operations

MetaWRAP — flexible pipeline for genome-resolved metagenomic data analysis. Wraps read QC (trimming, host removal), metagenomic assembly (MEGAHIT, metaSPAdes), binning (MaxBin2, metaBAT2, CONCOCT), bi

1 shared topic • 2 shared operations