metaSPAdes — de novo metagenomic assembler from the SPAdes suite using iterative de Bruijn graphs with multiple k-mer sizes optimized for uneven-coverage metagenomes. Assembles short-read (Illumina pa
Use with AI
Install the MCP server or CLI to instantly fetch metaSPAdes documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/metaspades
Use when working with Jovian for viral metagenomics or viromics from raw paired-end Illumina FASTQ data in public-health, clinical, or batch sequencing contexts. Jovian is a Snakemake-based workflow t
2 shared topics • 2 shared operations
Kaiju is a fast taxonomic classifier for metagenomic sequencing reads using protein-level sequence matching. Translates DNA reads into amino acid sequences and compares against NCBI protein reference
2 shared topics • 1 shared operation
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2 shared topics • 1 shared operation
2 shared topics • 1 shared operation
VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out
2 shared topics • 1 shared operation