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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1 | VEP (Ensembl Variant Effect Predictor) | Genomics | Genomics | 68.98 | +17% |
| 2 | SAMtools | Genomics | Genomics | 68.86 | +15% |
Data as of: Apr 12, 2026
| 3 | DESeq2 | Transcriptomics | Transcriptomics | 68.08 | +15% |
| 4 | AlphaFold | Structure Prediction | Structure Prediction | 67.78 | +15% |
| 5 | STAR | Transcriptomics | Transcriptomics | 67.48 | +15% |
| 6 | edgeR | Transcriptomics | Transcriptomics | 66.28 | +15% |
| 7 | Nextflow | Workflows | Workflows | 65.68 | +15% |
| 8 | MultiQC | QC & Preprocessing | QC & Preprocessing | 65.2 | +17% |
| 9 | Picard | Genomics | Genomics | 65.08 | +15% |
| 10 | HMMER | Genomics | Genomics | 64.48 | +17% |