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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 1189 | CyTOF Workflow (CATALYST) | Single-Cell | Single-Cell | 26.7 | +3% |
| 1866 | CytoML | Single-Cell | Single-Cell | 21.84 | +3% |
| 621 | Cytoscape | Systems Biology | Systems Biology | 35.74 | +8% |
| 1819 | Cytoscape.js | Machine Learning | Machine Learning | 22.68 | +3% |
| 433 | CytoTRACE -- Predicting Differentiation State from scRNA-seq | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 364 | cyvcf2 | Genomics | Genomics | 36.52 | +8% |
| 1597 | CZ CELLxGENE Census | Single-Cell | Single-Cell | 24.3 | +3% |
| 149 | DADA2 | Metagenomics | Metagenomics | 38.86 | +8% |