CZ CELLxGENE Census

CellPhoneDB — repository of curated receptors, ligands, and their interactions for cell-cell communication analysis from single-cell RNA-seq data. Performs permutation-based statistical analysis (stat

1 shared topic • 2 shared operations

ConsensusClusterPlus — R/Bioconductor package for determining cluster count and membership by stability evidence in unsupervised analysis, implementing the Monti et al. (2003) consensus clustering alg

1 shared topic • 2 shared operations

DecontX — R/Bioconductor method in the celda package for estimating and removing ambient RNA contamination from droplet-based single-cell RNA-seq data. Uses a Bayesian Dirichlet mixture model over cel

1 shared topic • 2 shared operations

LIANA (LIgand-receptor ANAlysis) — unified Python framework for cell-cell communication inference from single-cell transcriptomics. Wraps multiple methods (CellPhoneDB, NATMI, Connectome, SingleCellSi

1 shared topic • 2 shared operations

scGen — deep learning framework for predicting single-cell perturbation responses using variational autoencoders. Predicts how cells respond to unseen conditions (drug treatment, genetic knockout, dis

1 shared topic • 2 shared operations