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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 503 | DIA-NN (diann-nextflow) | Proteomics | Proteomics | 35.8 | +8% |
| 502 | DeepCell | Imaging | Imaging | 35.8 | +8% |
Data as of: Apr 12, 2026
| 501 |
| dbCAN |
| Metagenomics |
| Metagenomics |
| 35.8 |
| +8% |
| 500 | Cumulus | Single-Cell | Single-Cell | 35.8 | +8% |
| 499 | Cromwell / WDL | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |
| 498 | CRISPRcleanR | Systems Biology | Systems Biology | 35.8 | +8% |
| 497 | cooltools | Genomics | Genomics | 35.8 | +8% |
| 496 | ComplexHeatmap | Imaging | Imaging | 35.8 | +8% |
| 495 | ClonalFrameML | Phylogenetics | Phylogenetics | 35.8 | +8% |
| 494 | ClinVar Submission Tools | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |