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Use when working with CRISPRcleanR — an R package for unsupervised correction of copy-number-driven biases and off-target effects in CRISPR pooled knock-out screens. Normalizes sgRNA read counts, remo
Use with AI
Install the MCP server or CLI to instantly fetch CRISPRcleanR documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/crisprcleanr
BioRender — web-based platform for creating professional scientific figures, illustrations, and diagrams. Use for designing publication-quality figures for research papers, grants, posters, and presen
1 shared topic • 1 shared operation
CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ
1 shared topic • 1 shared operation
Use this skill when the user needs Control-FREEC (control-FREEC, FREEC, copy-number calling, CNA segmentation, LOH/BAF estimation, or exome copy-number analysis from BAM/pileup). Route requests for FR
1 shared topic • 1 shared operation
CopyKAT (Copy number Karyotyping of Tumors) — R package for inferring genome-wide aneuploidy and copy number variations from single-cell RNA-seq data. Uses Bayesian segmentation to distinguish tumor (
1 shared topic • 1 shared operation
Use when working with segway — segway — probabilistic genome segmentation
1 shared topic • 1 shared operation