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Use when working with dbCAN — run_dbcan — for CAZyme annotation of protein or genome sequences from metagenomics and microbiome studies. Annotates Carbohydrate-Active enZymes (CAZymes) including glyco
Use with AI
Install the MCP server or CLI to instantly fetch dbCAN documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/dbcan
Use when working with abricate — ABRicate — mass screening of contigs
2 shared topics • 1 shared operation
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
2 shared topics • 1 shared operation
gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr
2 shared topics • 1 shared operation
Pyrodigal is a Python library binding to Prodigal for gene prediction in prokaryotic genomes and metagenomes. Provides in-memory ORF finding with SIMD-accelerated scoring, single-genome and metagenomi
2 shared topics • 1 shared operation
VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out
2 shared topics • 1 shared operation