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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 979 | Ebseq | Transcriptomics | Transcriptomics | 28.86 | +3% |
| 861 | Earth2Mip | Machine Learning | Machine Learning | 29.4 | +3% |
Data as of: Apr 12, 2026
| 313 |
| EAGLE |
| Transcriptomics |
| Transcriptomics |
| 38.74 |
| +8% |
| 1222 | EAGER2 / nf-core/eager | Genomics | Genomics | 26.7 | +3% |
| 215 | Dysgu | Genomics | Genomics | 38.8 | +8% |
| 773 | Dynamo | Single-Cell | Single-Cell | 29.7 | +3% |
| 860 | DVC (Data Version Control) | Machine Learning | Machine Learning | 29.4 | +3% |
| 1221 | Duplex-Seq-Pipeline | Genomics | Genomics | 26.7 | +3% |
| 1617 | DT | Visualization | Visualization | 24.3 | +3% |
| 1220 | DSS | Epigenomics | Epigenomics | 26.7 | +3% |