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EAGER2 / nf-core/eager — reproducible Nextflow pipeline for ancient DNA (aDNA) and palaeogenomics. Handles adapter trimming with AdapterRemoval2, read merging, low-complexity filtering, mapping with B
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Install the MCP server or CLI to instantly fetch EAGER2 / nf-core/eager documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/eager2-nf-coreeager
BBDuk (Decontamination Using Kmers) — high-performance Java tool from the BBTools suite for adapter trimming, quality trimming, contaminant filtering, sequence masking, GC filtering, and format conver
2 shared topics • 2 shared operations
Guppy — Oxford Nanopore Technologies neural-network basecaller for converting raw nanopore signal data (FAST5/POD5) into nucleotide sequences (FASTQ/BAM). Supports GPU-accelerated basecalling, barcodi
2 shared topics • 2 shared operations
Use when working with the ARTIC viral amplicon sequencing command-line pipeline for Oxford Nanopore data. Covers documented `artic minion`, `artic guppyplex`, and `artic_get_models` workflows for prim
2 shared topics • 1 shared operation
MetaWRAP — flexible pipeline for genome-resolved metagenomic data analysis. Wraps read QC (trimming, host removal), metagenomic assembly (MEGAHIT, metaSPAdes), binning (MaxBin2, metaBAT2, CONCOCT), bi
2 shared topics • 1 shared operation
PacBio Revio tools — suite of command-line utilities for processing HiFi long reads generated by the PacBio Revio system. Covers CCS (circular consensus sequencing) generation with pbccs/ccs, demultip
2 shared topics • 1 shared operation