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Dysgu — structural variant caller for paired-end and long-read sequencing data (Illumina, PacBio HiFi, Oxford Nanopore). Detects deletions, insertions, duplications, inversions, and translocations fro
Use with AI
Install the MCP server or CLI to instantly fetch Dysgu documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/dysgu
Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi
1 shared topic • 2 shared operations
DADA2 — high-resolution amplicon sequence variant (ASV) inference from Illumina, 454, and Ion Torrent amplicon sequencing data. R/Bioconductor package that models sequencing errors to resolve exact bi
1 shared topic • 2 shared operations
GATK VQSR (Variant Quality Score Recalibration) — machine learning-based variant filtering for GATK Best Practices germline pipelines. Trains a Gaussian mixture model on truth/training resource datase
1 shared topic • 2 shared operations
SnpSift -- Java-based toolset for filtering, annotating, and manipulating annotated VCF files from SnpEff or other variant callers. Provides expression-based filtering (filter), database annotation wi
1 shared topic • 2 shared operations
Strelka2 — fast and accurate small variant caller for germline and somatic analysis. Detects SNVs and indels (up to ~49 bp) from mapped paired-end sequencing reads with tiered haplotype modeling, adap
1 shared topic • 2 shared operations