Loading homepage
Strelka2 — fast and accurate small variant caller for germline and somatic analysis. Detects SNVs and indels (up to ~49 bp) from mapped paired-end sequencing reads with tiered haplotype modeling, adap
Use with AI
Install the MCP server or CLI to instantly fetch Strelka2 documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/strelka2
GATK4 — Genome Analysis Toolkit for germline and somatic short variant discovery (SNPs and indels). Industry-standard caller providing HaplotypeCaller for germline, Mutect2 for somatic, plus Base Qual
3 shared topics • 2 shared operations
Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi
2 shared topics • 3 shared operations
Use when working with slivar — slivar — fast VCF/BCF variant filtering
2 shared topics • 3 shared operations
SnpSift -- Java-based toolset for filtering, annotating, and manipulating annotated VCF files from SnpEff or other variant callers. Provides expression-based filtering (filter), database annotation wi
2 shared topics • 3 shared operations
WDL/Cromwell — Workflow Description Language (WDL) authoring and Cromwell execution engine for reproducible bioinformatics pipelines. WDL defines portable, composable workflows using task/workflow blo
3 shared topics • 1 shared operation