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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 128 | Sqanti3 | Transcriptomics | Transcriptomics | 40.54 | +8% |
| 129 | Nextstrain | Clinical Genomics | Clinical Genomics | 40.42 | +8% |
Data as of: Apr 12, 2026
| 131 | Workflow Generator | Utilities & Infrastructure | Utilities & Infrastructure | 39.94 | +8% |
| 132 | NetCoMi | Other | Other | 39.76 | +8% |
| 133 | Cftime | Other | Other | 39.7 | +8% |
| 134 | Nebulosa | Single-Cell | Single-Cell | 39.7 | +8% |
| 139 | BWA-MEM2 | Genomics | Genomics | 38.92 | +8% |
| 140 | GATK HaplotypeCaller | Genomics | Genomics | 38.92 | +8% |
| 141 | ProteoWizard msconvert | Proteomics | Proteomics | 38.92 | +8% |
| 142 | AlphaTims | Proteomics | Proteomics | 38.86 | +8% |