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ProteoWizard msconvert — command-line mass spectrometry data converter for proteomics workflows. Use when converting vendor RAW files (Thermo, AB SCIEX, Waters, Bruker, Agilent) to open formats (mzML,
Use with AI
Install the MCP server or CLI to instantly fetch ProteoWizard msconvert documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/proteowizardmsconvert
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1 shared topic • 1 shared operation
CWLtool — reference implementation of the Common Workflow Language (CWL) for portable, reproducible bioinformatics workflows. Executes CommandLineTool, Workflow, and ExpressionTool descriptors written
1 shared topic • 1 shared operation
Latch SDK — Python-native bioinformatics workflow platform for registering, executing, and sharing reproducible workflows on cloud infrastructure. Define workflows with @workflow and @task decorators,
1 shared topic • 1 shared operation
MDAnalysis — Python library for analyzing molecular dynamics trajectories and atomic coordinate data. Supports 40+ file formats (DCD, XTC, TRR, PDB, GRO, AMBER, LAMMPS). Provides RMSD, RMSF, hydrogen
1 shared topic • 1 shared operation
MDTraj — Python library for reading, writing, and analyzing molecular dynamics trajectories. Supports 20+ formats (DCD, XTC, TRR, PDB, HDF5, NetCDF, etc.) with NumPy-native arrays. Provides RMSD, RMSF
1 shared topic • 1 shared operation